IL_6HRM_102
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 6HRM|1|1|A|2633, 6HRM|1|1|U|2636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_102 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0675
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
6HRM|1|1|G|2530
6HRM|1|1|G|2531
6HRM|1|1|G|2532
6HRM|1|1|A|2533
6HRM|1|1|A|2534
6HRM|1|1|A|2535
6HRM|1|1|C|2536
*
6HRM|1|1|G|2630
6HRM|1|1|G|2631
6HRM|1|1|A|2632
6HRM|1|1|A|2633
6HRM|1|1|G|2634
6HRM|1|1|A|2635
6HRM|1|1|U|2636
6HRM|1|1|G|2637
6HRM|1|1|U|2638
6HRM|1|1|A|2639
6HRM|1|1|A|2640
6HRM|1|1|C|2641
6HRM|1|1|G|2642
6HRM|1|1|G|2643
6HRM|1|1|G|2644
6HRM|1|1|G|2645
6HRM|1|1|C|2646
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain M
- 50S ribosomal protein L16
- Chain f
- 50S ribosomal protein L36
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