IL_6HRM_105

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GAAAG*CUC

Length

8 nucleotides

Bulged bases

6HRM|1|1|A|2594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_105 not in the Motif Atlas

Homologous match to IL_9DFE_043

Geometric discrepancy: 0.4329

The information below is about IL_9DFE_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HRM|1|1|G|2593
6HRM|1|1|A|2594
6HRM|1|1|A|2595
6HRM|1|1|A|2596
6HRM|1|1|G|2597
*
6HRM|1|1|C|2606
6HRM|1|1|U|2607
6HRM|1|1|C|2608

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain F

50S ribosomal protein L6

Chain I

50S ribosomal protein L11

Chain f

50S ribosomal protein L36