IL_6HRM_109
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_109 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.0617
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6HRM|1|1|A|2768
6HRM|1|1|U|2769
6HRM|1|1|A|2770
6HRM|1|1|A|2771
6HRM|1|1|G|2772
6HRM|1|1|U|2773
6HRM|1|1|A|2774
6HRM|1|1|A|2775
*
6HRM|1|1|U|3517
6HRM|1|1|G|3518
6HRM|1|1|A|3519
6HRM|1|1|A|3520
6HRM|1|1|A|3521
6HRM|1|1|U|3522
6HRM|1|1|U|3523
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
Coloring options: