IL_6HRM_113

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_113 not in the Motif Atlas

Geometric match to IL_5J7L_293

Geometric discrepancy: 0.0756

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6HRM|1|1|C|2863
6HRM|1|1|G|2864
6HRM|1|1|A|2865
6HRM|1|1|G|2866
6HRM|1|1|G|2867
*
6HRM|1|1|C|2876
6HRM|1|1|G|2877
6HRM|1|1|U|2878
6HRM|1|1|A|2879
6HRM|1|1|G|2880

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain X

50S ribosomal protein L28

Chain d

50S ribosomal protein L34