IL_6HRM_115

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6HRM|1|1|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_115 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.1054

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6HRM|1|1|C|2923
6HRM|1|1|G|2924
6HRM|1|1|A|2925
6HRM|1|1|A|2926
6HRM|1|1|G|2927
*
6HRM|1|1|C|3083
6HRM|1|1|U|3084
6HRM|1|1|A|3085
6HRM|1|1|A|3086
6HRM|1|1|G|3087

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains