IL_6HRM_128

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6HRM|1|1|G|3205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_128 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0849

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6HRM|1|1|C|3192
6HRM|1|1|G|3193
6HRM|1|1|U|3194
6HRM|1|1|A|3195
6HRM|1|1|A|3196
6HRM|1|1|C|3197
*
6HRM|1|1|G|3202
6HRM|1|1|G|3203
6HRM|1|1|A|3204
6HRM|1|1|G|3205
6HRM|1|1|A|3206
6HRM|1|1|A|3207
6HRM|1|1|G|3208

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2