IL_6HRM_129

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6HRM|1|1|U|3220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_129 not in the Motif Atlas

Geometric match to IL_5J7L_309

Geometric discrepancy: 0.0996

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6HRM|1|1|U|3218
6HRM|1|1|A|3219
6HRM|1|1|U|3220
6HRM|1|1|G|3221
6HRM|1|1|U|3222
6HRM|1|1|A|3223
6HRM|1|1|G|3224
*
6HRM|1|1|U|3248
6HRM|1|1|G|3249
6HRM|1|1|A|3250
6HRM|1|1|A|3251
6HRM|1|1|A|3252

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains