IL_6HRM_138
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAAA(5MU)UCCUUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6HRM|1|1|A|3444, 6HRM|1|1|U|3450
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HRM_138 not in the Motif Atlas
- Geometric match to IL_7A0S_072
- Geometric discrepancy: 0.1459
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
6HRM|1|1|C|3440
6HRM|1|1|G|3441
6HRM|1|1|A|3442
6HRM|1|1|A|3443
6HRM|1|1|A|3444
6HRM|1|1|5MU|3445
6HRM|1|1|U|3446
6HRM|1|1|C|3447
6HRM|1|1|C|3448
6HRM|1|1|U|3449
6HRM|1|1|U|3450
6HRM|1|1|G|3451
*
6HRM|1|1|C|3467
6HRM|1|1|5MC|3468
6HRM|1|1|U|3469
6HRM|1|1|G|3470
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
Coloring options: