IL_6HRM_140

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6HRM|1|1|C|3561, 6HRM|1|1|U|4119, 6HRM|1|1|A|4120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_140 not in the Motif Atlas

Geometric match to IL_5J7L_321

Geometric discrepancy: 0.081

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6HRM|1|1|A|3560
6HRM|1|1|C|3561
6HRM|1|1|G|3562
*
6HRM|1|1|C|4118
6HRM|1|1|U|4119
6HRM|1|1|A|4120
6HRM|1|1|U|4121

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain S

50S ribosomal protein L22

Chain b

50S ribosomal protein L32