IL_6HRM_160

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

6HRM|1|1|A|4048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_160 not in the Motif Atlas

Geometric match to IL_7A0S_091

Geometric discrepancy: 0.1514

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

6HRM|1|1|U|4028
6HRM|1|1|G|4029
*
6HRM|1|1|C|4046
6HRM|1|1|A|4047
6HRM|1|1|A|4048
6HRM|1|1|G|4049

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36