3D structure

PDB id
6HRM (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S d2d8 stapled ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.96 Å

Loop

Sequence
GGAACUAGG*CUGUC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6HRM_187 not in the Motif Atlas
Geometric match to IL_4WF9_117
Geometric discrepancy: 0.0603
The information below is about IL_4WF9_117
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_80252.1
Basepair signature
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
Number of instances in this motif group
10

Unit IDs

6HRM|1|1|G|3172
6HRM|1|1|G|3173
6HRM|1|1|A|3174
6HRM|1|1|A|3175
6HRM|1|1|C|3176
6HRM|1|1|U|3177
6HRM|1|1|A|3178
6HRM|1|1|G|3179
6HRM|1|1|G|3180
*
6HRM|1|1|C|3496
6HRM|1|1|U|3497
6HRM|1|1|G|3498
6HRM|1|1|U|3499
6HRM|1|1|C|3500

Current chains

Chain 1
stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain K
50S ribosomal protein L14

Coloring options:


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