IL_6HRM_201

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6HRM|1|1|U|3637, 6HRM|1|1|U|3638

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HRM_201 not in the Motif Atlas

Geometric match to IL_5J7L_330

Geometric discrepancy: 0.3962

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6HRM|1|1|C|3635
6HRM|1|1|U|3636
6HRM|1|1|U|3637
6HRM|1|1|U|3638
6HRM|1|1|G|3639
6HRM|1|1|A|3640
6HRM|1|1|A|3641
6HRM|1|1|G|3642
*
6HRM|1|1|U|3661
6HRM|1|1|G|3662
6HRM|1|1|G|3663
6HRM|1|1|A|3664
6HRM|1|1|G|3665

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains