IL_6HTQ_033

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCCCAAAGUA*UCA

Length

13 nucleotides

Bulged bases

6HTQ|1|A|U|1058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_033 not in the Motif Atlas

Geometric match to IL_4V88_417

Geometric discrepancy: 0.1692

The information below is about IL_4V88_417

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6HTQ|1|A|U|1050
6HTQ|1|A|C|1051
6HTQ|1|A|C|1052
6HTQ|1|A|C|1053
6HTQ|1|A|A|1054
6HTQ|1|A|A|1055
6HTQ|1|A|A|1056
6HTQ|1|A|G|1057
6HTQ|1|A|U|1058
6HTQ|1|A|A|1059
*
6HTQ|1|A|U|1195
6HTQ|1|A|C|1196
6HTQ|1|A|A|1197

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20