IL_6HTQ_034

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_034 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.202

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6HTQ|1|A|U|1064
6HTQ|1|A|U|1065
6HTQ|1|A|A|1066
6HTQ|1|A|A|1067
6HTQ|1|A|G|1068
6HTQ|1|A|U|1069
6HTQ|1|A|G|1070
*
6HTQ|1|A|C|1186
6HTQ|1|A|U|1187
6HTQ|1|A|A|1188
6HTQ|1|A|A|1189
6HTQ|1|A|A|1190

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain J

50S ribosomal protein L13