IL_6HTQ_060

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGUUAG*CGAGA

Length

11 nucleotides

Bulged bases

6HTQ|1|A|U|1758

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_060 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.3462

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6HTQ|1|A|U|1756
6HTQ|1|A|G|1757
6HTQ|1|A|U|1758
6HTQ|1|A|U|1759
6HTQ|1|A|A|1760
6HTQ|1|A|G|1761
*
6HTQ|1|A|C|1772
6HTQ|1|A|G|1773
6HTQ|1|A|A|1774
6HTQ|1|A|G|1775
6HTQ|1|A|A|1776

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA