IL_6HTQ_062
3D structure
- PDB id
- 6HTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- UGCGAAG*CGAAGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 6HTQ|1|A|G|1830, 6HTQ|1|A|A|1845, 6HTQ|1|A|U|1849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HTQ_062 not in the Motif Atlas
- Homologous match to IL_4WF9_069
- Geometric discrepancy: 0.1512
- The information below is about IL_4WF9_069
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6HTQ|1|A|U|1827
6HTQ|1|A|G|1828
6HTQ|1|A|C|1829
6HTQ|1|A|G|1830
6HTQ|1|A|A|1831
6HTQ|1|A|A|1832
6HTQ|1|A|G|1833
*
6HTQ|1|A|C|1842
6HTQ|1|A|G|1843
6HTQ|1|A|A|1844
6HTQ|1|A|A|1845
6HTQ|1|A|G|1846
6HTQ|1|A|U|1847
6HTQ|1|A|A|1848
6HTQ|1|A|U|1849
6HTQ|1|A|A|1850
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain W
- 50S ribosomal protein L28
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: