IL_6HTQ_077

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAGA*UCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_077 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3405

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HTQ|1|A|C|2379
6HTQ|1|A|G|2380
6HTQ|1|A|A|2381
6HTQ|1|A|G|2382
6HTQ|1|A|A|2383
*
6HTQ|1|A|U|2392
6HTQ|1|A|C|2393
6HTQ|1|A|G|2394
6HTQ|1|A|A|2395
6HTQ|1|A|G|2396

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L35

Chain V

50S ribosomal protein L27