IL_6HTQ_120

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAUGAAG*CGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_120 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2207

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6HTQ|1|a|U|417
6HTQ|1|a|G|418
6HTQ|1|a|A|419
6HTQ|1|a|U|420
6HTQ|1|a|G|421
6HTQ|1|a|A|422
6HTQ|1|a|A|423
6HTQ|1|a|G|424
*
6HTQ|1|a|C|435
6HTQ|1|a|G|436
6HTQ|1|a|U|437
6HTQ|1|a|A|438
6HTQ|1|a|A|439
6HTQ|1|a|A|440
6HTQ|1|a|G|441

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S4