IL_6HTQ_123

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GUGC*GUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_123 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.247

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6HTQ|1|a|G|464
6HTQ|1|a|U|465
6HTQ|1|a|G|466
6HTQ|1|a|C|467
*
6HTQ|1|a|G|483
6HTQ|1|a|U|484
6HTQ|1|a|A|485
6HTQ|1|a|C|486

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16