IL_6HTQ_139

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UGAC*GUACA

Length

9 nucleotides

Bulged bases

6HTQ|1|a|A|1403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_139 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.384

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6HTQ|1|a|U|931
6HTQ|1|a|G|932
6HTQ|1|a|A|933
6HTQ|1|a|C|934
*
6HTQ|1|a|G|1401
6HTQ|1|a|U|1402
6HTQ|1|a|A|1403
6HTQ|1|a|C|1404
6HTQ|1|a|A|1405

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S5