IL_6HTQ_155

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CGAAA*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_155 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.2372

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6HTQ|1|a|C|1268
6HTQ|1|a|G|1269
6HTQ|1|a|A|1270
6HTQ|1|a|A|1271
6HTQ|1|a|A|1272
*
6HTQ|1|a|U|1281
6HTQ|1|a|U|1282
6HTQ|1|a|A|1283
6HTQ|1|a|A|1284
6HTQ|1|a|G|1285

Current chains

Chain a

16S rRNA

Nearby chains

Chain s

30S ribosomal protein S19