IL_6HTQ_169

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCA*UGAC

Length

7 nucleotides

Bulged bases

6HTQ|1|A|A|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_169 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2161

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6HTQ|1|A|G|36
6HTQ|1|A|C|37
6HTQ|1|A|A|38
*
6HTQ|1|A|U|488
6HTQ|1|A|G|489
6HTQ|1|A|A|490
6HTQ|1|A|C|491

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20