IL_6HTQ_178

3D structure

PDB id

6HTQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUU*AGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6HTQ_178 not in the Motif Atlas

Homologous match to IL_4WF9_034

Geometric discrepancy: 0.2008

The information below is about IL_4WF9_034

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6HTQ|1|A|A|917
6HTQ|1|A|U|918
6HTQ|1|A|U|919
*
6HTQ|1|A|A|952
6HTQ|1|A|G|953
6HTQ|1|A|U|954

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain x

GTP pyrophosphokinase