IL_6HTQ_217
3D structure
- PDB id
- 6HTQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- GGUGAG*CAGCC
- Length
- 11 nucleotides
- Bulged bases
- 6HTQ|1|a|A|1451
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6HTQ_217 not in the Motif Atlas
- Geometric match to IL_5VOE_003
- Geometric discrepancy: 0.3699
- The information below is about IL_5VOE_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_21086.2
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HTQ|1|a|G|1447
6HTQ|1|a|G|1448
6HTQ|1|a|U|1449
6HTQ|1|a|G|1450
6HTQ|1|a|A|1451
6HTQ|1|a|G|1452
*
6HTQ|1|a|C|1469
6HTQ|1|a|A|1470
6HTQ|1|a|G|1471
6HTQ|1|a|C|1472
6HTQ|1|a|C|1473
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L19
- Chain t
- 30S ribosomal protein S20
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