IL_6I0Y_116

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I0Y_116 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0683

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6I0Y|1|A|U|1851
6I0Y|1|A|U|1852
6I0Y|1|A|A|1853
6I0Y|1|A|A|1854
6I0Y|1|A|U|1855
6I0Y|1|A|U|1856
6I0Y|1|A|G|1857
6I0Y|1|A|A|1858
6I0Y|1|A|U|1859
6I0Y|1|A|G|1860
*
6I0Y|1|A|U|1882
6I0Y|1|A|U|1883
6I0Y|1|A|G|1884
6I0Y|1|A|A|1885
6I0Y|1|A|U|1886
6I0Y|1|A|C|1887
6I0Y|1|A|G|1888
6I0Y|1|A|A|1889
6I0Y|1|A|A|1890
6I0Y|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains