IL_6I7O_020
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_020 not in the Motif Atlas
- Homologous match to IL_4V88_403
- Geometric discrepancy: 0.3369
- The information below is about IL_4V88_403
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85724.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
6I7O|1|2|U|318
6I7O|1|2|U|319
6I7O|1|2|U|320
6I7O|1|2|C|321
6I7O|1|2|G|322
6I7O|1|2|A|323
*
6I7O|1|2|U|345
6I7O|1|2|G|346
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain BF
- 60S ribosomal protein L19-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain V
- 40S ribosomal protein S8-A
- Chain X
- 40S ribosomal protein S11-A
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