IL_6I7O_047

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6I7O|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_047 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2502

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6I7O|1|2|U|893
6I7O|1|2|U|894
6I7O|1|2|G|895
6I7O|1|2|U|896
6I7O|1|2|C|897
6I7O|1|2|A|898
6I7O|1|2|G|899
*
6I7O|1|2|C|910
6I7O|1|2|U|911
6I7O|1|2|U|912
6I7O|1|2|G|913
6I7O|1|2|G|914
6I7O|1|2|A|915
6I7O|1|2|U|916
6I7O|1|2|U|917
6I7O|1|2|U|918
6I7O|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain Q

40S ribosomal protein S1-A

Chain Z

40S ribosomal protein S14-B