IL_6I7O_064
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UGGC*GUCUGUGA
- Length
- 12 nucleotides
- Bulged bases
- 6I7O|1|2|U|1432, 6I7O|1|2|G|1435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_064 not in the Motif Atlas
- Geometric match to IL_5J7L_010
- Geometric discrepancy: 0.3041
- The information below is about IL_5J7L_010
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- Minor groove platform related
- Motif group
- IL_64231.5
- Basepair signature
- cWW-cWW-L-R-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6I7O|1|2|U|1276
6I7O|1|2|G|1277
6I7O|1|2|G|1278
6I7O|1|2|C|1279
*
6I7O|1|2|G|1429
6I7O|1|2|U|1430
6I7O|1|2|C|1431
6I7O|1|2|U|1432
6I7O|1|2|G|1433
6I7O|1|2|U|1434
6I7O|1|2|G|1435
6I7O|1|2|A|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S3
- Chain C
- 40S ribosomal protein S10-A
- Chain J
- 40S ribosomal protein S20
- Chain M
- 40S ribosomal protein S29-A
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