IL_6I7O_078

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_078 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1808

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6I7O|1|2|G|1642
6I7O|1|2|U|1643
6I7O|1|2|C|1644
*
6I7O|1|2|G|1757
6I7O|1|2|U|1758
6I7O|1|2|C|1759

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AS

60S ribosomal protein L41-B

Chain BQ

Large subunit ribosomal RNA; LSU rRNA

Chain l

mRNA