IL_6I7O_100

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_100 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1293

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6I7O|1|2b|C|186
6I7O|1|2b|G|187
6I7O|1|2b|A|188
6I7O|1|2b|C|189
*
6I7O|1|2b|G|196
6I7O|1|2b|A|197
6I7O|1|2b|A|198
6I7O|1|2b|G|199

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A