IL_6I7O_107

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_107 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.177

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37738.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6I7O|1|2b|U|318
6I7O|1|2b|U|319
6I7O|1|2b|U|320
6I7O|1|2b|C|321
6I7O|1|2b|G|322
6I7O|1|2b|A|323
*
6I7O|1|2b|U|345
6I7O|1|2b|G|346

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Vb

40S ribosomal protein S8-A

Chain Xb

40S ribosomal protein S11-A

Chain YQ

Large subunit ribosomal RNA; LSU rRNA