IL_6I7O_117

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

ACA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_117 not in the Motif Atlas

Geometric match to IL_4V88_388

Geometric discrepancy: 0.1979

The information below is about IL_4V88_388

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

6I7O|1|2b|A|518
6I7O|1|2b|C|519
6I7O|1|2b|A|520
*
6I7O|1|2b|U|532
6I7O|1|2b|U|533

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Wb

40S ribosomal protein S9-A

Chain db

40S ribosomal protein S24-A