IL_6I7O_127
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUU*AUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_127 not in the Motif Atlas
- Geometric match to IL_2O3Y_004
- Geometric discrepancy: 0.1293
- The information below is about IL_2O3Y_004
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
6I7O|1|2b|U|748
6I7O|1|2b|U|749
6I7O|1|2b|U|750
*
6I7O|1|2b|A|799
6I7O|1|2b|U|800
6I7O|1|2b|G|801
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Sb
- 40S ribosomal protein S4-A
- Chain Ub
- 40S ribosomal protein S7-A
- Chain Xb
- 40S ribosomal protein S11-A
- Chain bb
- 40S ribosomal protein S22-A
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