IL_6I7O_128

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|2b|G|751
6I7O|1|2b|A|752
6I7O|1|2b|A|753
6I7O|1|2b|A|754
6I7O|1|2b|A|755
6I7O|1|2b|A|756
6I7O|1|2b|A|757
6I7O|1|2b|U|758
6I7O|1|2b|U|759
6I7O|1|2b|A|760
*
6I7O|1|2b|U|790
6I7O|1|2b|A|791
6I7O|1|2b|U|792
6I7O|1|2b|A|793
6I7O|1|2b|U|794
6I7O|1|2b|U|795
6I7O|1|2b|A|796
6I7O|1|2b|G|797
6I7O|1|2b|C|798

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Sb

40S ribosomal protein S4-A

Chain Wb

40S ribosomal protein S9-A

Chain Xb

40S ribosomal protein S11-A

Chain bb

40S ribosomal protein S22-A