IL_6I7O_135
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6I7O|1|2b|G|913
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_135 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.2712
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
6I7O|1|2b|U|893
6I7O|1|2b|U|894
6I7O|1|2b|G|895
6I7O|1|2b|U|896
6I7O|1|2b|C|897
6I7O|1|2b|A|898
6I7O|1|2b|G|899
*
6I7O|1|2b|C|910
6I7O|1|2b|U|911
6I7O|1|2b|U|912
6I7O|1|2b|G|913
6I7O|1|2b|G|914
6I7O|1|2b|A|915
6I7O|1|2b|U|916
6I7O|1|2b|U|917
6I7O|1|2b|U|918
6I7O|1|2b|A|919
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Qb
- 40S ribosomal protein S1-A
- Chain XW
- 60S ribosomal protein L2-A
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Zb
- 40S ribosomal protein S14-B
Coloring options: