IL_6I7O_140

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6I7O|1|2b|U|1052

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_140 not in the Motif Atlas

Geometric match to IL_2PJP_001

Geometric discrepancy: 0.2263

The information below is about IL_2PJP_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6I7O|1|2b|G|1051
6I7O|1|2b|U|1052
6I7O|1|2b|G|1053
*
6I7O|1|2b|C|1066
6I7O|1|2b|C|1067

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Gb

40S ribosomal protein S17-A

Chain Qb

40S ribosomal protein S1-A

Chain fb

40S ribosomal protein S27-A