IL_6I7O_143

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

6I7O|1|2b|G|1150

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_143 not in the Motif Atlas

Geometric match to IL_4V88_442

Geometric discrepancy: 0.1769

The information below is about IL_4V88_442

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6I7O|1|2b|G|1149
6I7O|1|2b|G|1150
6I7O|1|2b|A|1151
*
6I7O|1|2b|U|1627
6I7O|1|2b|U|1628

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain eb

40S ribosomal protein S26-B

Chain l

mRNA