IL_6I7O_154

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_154 not in the Motif Atlas

Geometric match to IL_5J7L_011

Geometric discrepancy: 0.1417

The information below is about IL_5J7L_011

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6I7O|1|2b|U|1290
6I7O|1|2b|G|1291
6I7O|1|2b|G|1292
*
6I7O|1|2b|C|1323
6I7O|1|2b|G|1324
6I7O|1|2b|A|1325

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Ab

40S ribosomal protein S3

Chain Gb

40S ribosomal protein S17-A

Chain Pb

40S ribosomal protein S0-A

Chain Rb

40S ribosomal protein S2