IL_6I7O_156

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUAC*GAG

Length

7 nucleotides

Bulged bases

6I7O|1|2b|U|1340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_156 not in the Motif Atlas

Geometric match to IL_4V88_455

Geometric discrepancy: 0.2226

The information below is about IL_4V88_455

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6I7O|1|2b|C|1339
6I7O|1|2b|U|1340
6I7O|1|2b|A|1341
6I7O|1|2b|C|1342
*
6I7O|1|2b|G|1383
6I7O|1|2b|A|1384
6I7O|1|2b|G|1385

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Fb

40S ribosomal protein S16-A

Chain Gb

40S ribosomal protein S17-A

Chain Jb

40S ribosomal protein S20

Chain Ob

Guanine nucleotide-binding protein subunit beta-like protein