IL_6I7O_161

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUCUAAC*GUAAUC

Length

13 nucleotides

Bulged bases

6I7O|1|2b|U|1491, 6I7O|1|2b|A|1516

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_161 not in the Motif Atlas

Geometric match to IL_4V88_460

Geometric discrepancy: 0.1253

The information below is about IL_4V88_460

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_77092.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6I7O|1|2b|G|1488
6I7O|1|2b|U|1489
6I7O|1|2b|C|1490
6I7O|1|2b|U|1491
6I7O|1|2b|A|1492
6I7O|1|2b|A|1493
6I7O|1|2b|C|1494
*
6I7O|1|2b|G|1513
6I7O|1|2b|U|1514
6I7O|1|2b|A|1515
6I7O|1|2b|A|1516
6I7O|1|2b|U|1517
6I7O|1|2b|C|1518

Current chains

Chain 2b

18S ribosomal RNA

Nearby chains

Chain Ab

40S ribosomal protein S3

Chain Ib

40S ribosomal protein S19-A

Chain Jb

40S ribosomal protein S20

Chain Mb

40S ribosomal protein S29-A