IL_6I7O_201

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_201 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.1301

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6I7O|1|BQ|C|758
6I7O|1|BQ|U|759
6I7O|1|BQ|G|760
6I7O|1|BQ|A|761
6I7O|1|BQ|U|762
6I7O|1|BQ|G|763
*
6I7O|1|BQ|C|768
6I7O|1|BQ|G|769
6I7O|1|BQ|G|770
6I7O|1|BQ|A|771
6I7O|1|BQ|U|772
6I7O|1|BQ|G|773

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L13-A

Chain AP

60S ribosomal protein L42-A

Chain AR

60S ribosomal protein L28