IL_6I7O_204

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

6I7O|1|BQ|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_204 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1176

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

6I7O|1|BQ|A|828
6I7O|1|BQ|U|829
*
6I7O|1|BQ|A|895
6I7O|1|BQ|A|896
6I7O|1|BQ|U|897

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AW

60S ribosomal protein L2-A

Chain BN

60S ribosomal protein L34-A