3D structure

PDB id
6I7O (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
AA*UUU
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6I7O_215 not in the Motif Atlas
Homologous match to IL_8C3A_042
Geometric discrepancy: 0.1241
The information below is about IL_8C3A_042
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_18604.1
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
46

Unit IDs

6I7O|1|BQ|A|997
6I7O|1|BQ|A|998
*
6I7O|1|BQ|U|1050
6I7O|1|BQ|U|1051
6I7O|1|BQ|U|1052

Current chains

Chain BQ
25S ribosomal RNA

Nearby chains

Chain BD
60S ribosomal protein L10
Chain BI
60S ribosomal protein L5
Chain BJ
60S ribosomal protein L21-A
Chain BR
5S ribosomal RNA; 5S rRNA

Coloring options:


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