IL_6I7O_217

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_217 not in the Motif Atlas

Geometric match to IL_5TBW_041

Geometric discrepancy: 0.1019

The information below is about IL_5TBW_041

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6I7O|1|BQ|A|1006
6I7O|1|BQ|U|1007
6I7O|1|BQ|U|1008
6I7O|1|BQ|A|1009
*
6I7O|1|BQ|U|1041
6I7O|1|BQ|U|1042
6I7O|1|BQ|C|1043
6I7O|1|BQ|U|1044

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L10

Chain BI

60S ribosomal protein L5