IL_6I7O_221

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

6I7O|1|BQ|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_221 not in the Motif Atlas

Homologous match to IL_8C3A_048

Geometric discrepancy: 0.1427

The information below is about IL_8C3A_048

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

6I7O|1|BQ|U|1074
6I7O|1|BQ|A|1075
6I7O|1|BQ|C|1076
*
6I7O|1|BQ|G|1083
6I7O|1|BQ|A|1084

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A