IL_6I7O_238

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GUCAAC*GGAC

Length

10 nucleotides

Bulged bases

6I7O|1|BQ|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_238 not in the Motif Atlas

Homologous match to IL_8C3A_066

Geometric discrepancy: 0.1265

The information below is about IL_8C3A_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93630.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

6I7O|1|BQ|G|1500
6I7O|1|BQ|U|1501
6I7O|1|BQ|C|1502
6I7O|1|BQ|A|1503
6I7O|1|BQ|A|1504
6I7O|1|BQ|C|1505
*
6I7O|1|BQ|G|1513
6I7O|1|BQ|G|1514
6I7O|1|BQ|A|1515
6I7O|1|BQ|C|1516

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AL

60S ribosomal protein L39

Chain AX

60S ribosomal protein L17-A

Chain BF

60S ribosomal protein L19-A