IL_6I7O_271

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

AAUGAAGC*GGGUU

Length

13 nucleotides

Bulged bases

6I7O|1|BQ|G|2522, 6I7O|1|BQ|G|2585, 6I7O|1|BQ|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I7O|1|BQ|A|2519
6I7O|1|BQ|A|2520
6I7O|1|BQ|U|2521
6I7O|1|BQ|G|2522
6I7O|1|BQ|A|2523
6I7O|1|BQ|A|2524
6I7O|1|BQ|G|2525
6I7O|1|BQ|C|2526
*
6I7O|1|BQ|G|2584
6I7O|1|BQ|G|2585
6I7O|1|BQ|G|2586
6I7O|1|BQ|U|2587
6I7O|1|BQ|U|2588

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain AH

60S ribosomal protein L25

Chain AW

60S ribosomal protein L2-A

Chain BS

5.8S ribosomal RNA; 5.8S rRNA