IL_6I7O_276
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- GUCC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6I7O_276 not in the Motif Atlas
- Homologous match to IL_8C3A_110
- Geometric discrepancy: 0.2185
- The information below is about IL_8C3A_110
- Detailed Annotation
- Single stack bend with bulge
- Broad Annotation
- Single stack bend with bulge
- Motif group
- IL_39137.1
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|BQ|G|2770
6I7O|1|BQ|U|2771
6I7O|1|BQ|C|2772
6I7O|1|BQ|C|2773
*
6I7O|1|BQ|G|2787
6I7O|1|BQ|C|2788
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AJ
- 60S ribosomal protein L13-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AR
- 60S ribosomal protein L28
- Chain BB
- 60S ribosomal protein L18-A
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