IL_6I7O_281

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_281 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.122

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6I7O|1|BQ|U|2835
6I7O|1|BQ|C|2836
6I7O|1|BQ|A|2837
6I7O|1|BQ|A|2838
6I7O|1|BQ|G|2839
*
6I7O|1|BQ|C|2849
6I7O|1|BQ|G|2850
6I7O|1|BQ|A|2851
6I7O|1|BQ|C|2852
6I7O|1|BQ|A|2853

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain BD

60S ribosomal protein L10