IL_6I7O_286

3D structure

PDB id

6I7O (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

6I7O|1|BQ|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7O_286 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.2026

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

6I7O|1|BQ|U|2891
6I7O|1|BQ|A|2892
*
6I7O|1|BQ|U|2909
6I7O|1|BQ|A|2910
6I7O|1|BQ|A|2911
6I7O|1|BQ|G|2912

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40

Chain AU

60S ribosomal protein L16-A

Chain BA

60S ribosomal protein L3